{ "_id": "6a191dbcacfb0bcc41dccc8e", "Type": "Package", "Package": "epicrop", "Title": "SEIR Simulation Modelling of Crop Diseases", "Version": "1.0.0.9000", "Authors@R": "c(\nperson(\"Adam H.\", \"Sparks\", , \"adamhsparks@gmail.com\", role = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-0061-8359\")),\nperson(\"Robert\", \"Hijmans\", , \"robert.hijmans@gmail.com\", role = c(\"aut\", \"trl\", \"cph\"),\ncomment = c(\"Original R implementation\", ORCID = \"0000-0001-5872-2872\")),\nperson(\"Serge\", \"Savary\", , \"serge.savary@toulouse.inra.fr\", role = c(\"aut\", \"ccp\", \"cph\"),\ncomment = c(\"Model conception and development in Stella\", ORCID = \"0000-0002-6867-180X\")),\nperson(\"Ireno\", \"Pangga\", , \"ibpangga@yahoo.com\", role = c(\"aut\", \"trl\", \"cph\"),\ncomment = \"Model conception, development in Stella and original R\\n implementation\"),\nperson(\"Jorrel\", \"Aunario\", , \"j.aunario@irri.org\", role = c(\"aut\", \"trl\", \"cph\"),\ncomment = \"Original R implementation\"),\nperson(\"Kwang-Hyung\", \"Kim\", , \"sospicy77@gmail.com\", role = c(\"aut\", \"cph\"),\ncomment = \"Contributed code for modified Kim leaf blast and sheath blight functions and feedback on the implementation.\"),\nperson(\"Aji\", \"Sukarta\", , \"aji.ixb@gmail.com\", role = \"ctb\",\ncomment = \"Helped fix bug related to SEIR model and establishment\\n date\"),\nperson(\"Emerson\", \"Del Ponte\", , \"delponte@ufv.br\", role = \"ctb\",\ncomment = c(\"Suggested fixes for several typos in the documentation\", ORCID = \"0000-0003-4398-409X\"))\n)", "Description": "Generic simulation modelling of crop diseases using a\nSusceptible-Exposed-Infectious-Removed ('SEIR') model. This\ntype of model was first described in botanical epidemiology by\nZadoks (1971) and implemented in the\n'EPIRICE' model by Savary et al. (2012)\n detailing the model's\ndevelopment, use and results from modelling global unmanaged\nepidemics of rice diseases for five major rice diseases,\nbacterial blight, brown spot, leaf blast, sheath blight and\ntungro. Specific functions are provided to simulate all of\nthese diseases with a generic 'SEIR' model function that is\nsuitable for parameterising for use with other pathosystems as\ndemonstrated in Savary et al. 2012 and Kim et al. 2015\n along with two wheat\ndiseases, brown (leaf) rust and Septoria tritici blotch as\npublished in Savary et al. 2015\n. Functions for fetching and\nformatting weather data from the NASA POWER database are also\nprovided to simplify the process of running simulations.", "License": "GPL (>= 3)", "URL": "https://codeberg.org/adamhsparks/epicrop,\nhttps://adamhsparks.codeberg.page/epicrop", "BugReports": "https://codeberg.org/adamhsparks/epicrop/issues", "VignetteBuilder": "knitr", "ByteCompile": "TRUE", "Config/Needs/build": "moodymudskipper/devtag", "Config/roxygen2/version": "8.0.0", "Config/roxyglobals/filename": "globals.R", "Config/roxyglobals/unique": "FALSE", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE, roclets = c(\"collate\", \"namespace\",\n\"rd\", \"roxyglobals::global_roclet\", \"devtag::dev_roclet\"))", "Config/pak/sysreqs": "libssl-dev libx11-dev", "Repository": "https://adamhsparks.r-universe.dev", "Date/Publication": "2026-05-29 04:47:48 UTC", "RemoteUrl": "https://codeberg.org/adamhsparks/epicrop", "RemoteRef": "HEAD", "RemoteSha": "1dd18d5ec0906f0a961acecc1cd500af3aa2b3b7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 04:58:22 UTC", "User": "root" }, "Author": "Adam H. Sparks [cre, aut] (ORCID:\n),\nRobert Hijmans [aut, trl, cph] (Original R implementation, ORCID:\n),\nSerge Savary [aut, ccp, cph] (Model conception and development in\nStella, ORCID: ),\nIreno Pangga [aut, trl, cph] (Model conception, development in Stella\nand original R implementation),\nJorrel Aunario [aut, trl, cph] (Original R implementation),\nKwang-Hyung Kim [aut, cph] (Contributed code for modified Kim leaf\nblast and sheath blight functions and feedback on the\nimplementation.),\nAji Sukarta [ctb] (Helped fix bug related to SEIR model and\nestablishment date),\nEmerson Del Ponte [ctb] (Suggested fixes for several typos in the\ndocumentation, ORCID: )", "Maintainer": "Adam H. Sparks ", "MD5sum": "3c2957e9689b675129e2d11f73fae923", "_user": "adamhsparks", "_type": "src", "_file": "epicrop_1.0.0.9000.tar.gz", "_fileid": "742a9fee78f72639afbcd2bc6a1c472651255fa301a623a660f5db15e5a3ab2c", "_filesize": 651672, "_sha256": "742a9fee78f72639afbcd2bc6a1c472651255fa301a623a660f5db15e5a3ab2c", "_created": "2026-05-29T04:58:22.000Z", "_published": "2026-05-29T05:01:48.685Z", "_distro": "noble", "_jobs": [ { "job": 78440475875, "time": 164, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7283437398" }, { "job": 78440475865, "time": 168, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7283437993" }, { "job": 78440475826, "time": 113, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7283427000" }, { "job": 78440475849, "time": 109, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7283426380" }, { "job": 78440173907, "time": 183, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7283404073" }, { "job": 78440475822, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7283431087" }, { "job": 78440475818, "time": 109, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7283426337" }, { "job": 78440475852, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7283425485" }, { "job": 78440475835, "time": 100, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7283424591" } ], "_buildurl": "https://github.com/r-universe/adamhsparks/actions/runs/26618841923", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://codeberg.org/adamhsparks/epicrop", "_commit": { "id": "1dd18d5ec0906f0a961acecc1cd500af3aa2b3b7", "author": "Adam H. Sparks ", "committer": "Adam H. Sparks ", "message": "fix: strip non-ASCII characters\n", "time": 1780030068 }, "_maintainer": { "name": "Adam H. 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